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2024

Identification of extracellular vesicles from their Raman spectra via self-supervised learning - Scientific Reports (Mar. 2024)
M.N. Jensen , E.M. Guerreiro , A. Enciso-Martinez , S.G. Kruglik , C. Otto , O. Snir , B. Ricaud , O.G. Hellesø
  URL Full text PDF Bibtex doi:10.1038/s41598-024-56788-7
Structure and individuality of navigation in zebrafish larvae - hal (Feb. 2024)
M. Dommanget-Kott , J. Fernandez-De-Cossio-Diaz, , M. Coraggioso , V. Bormuth , R. Monasson, , G. Debrégeas , S. Cocco,
  URL Full text PDF Bibtex doi:
Lipidomics and biodistribution of extracellular vesicles-secreted by hepatocytes from Zucker lean and fatty rats - Journal of Extracellular Biology (Feb. 2024)
M. Azparren-Angulo , J. Mleczko , O.E. Alboniga , S.G. Kruglik , J.M. Guigner , E. Gonzalez , C. Garcia-Vallicrosa , J. Llop , C. Simó , C. Alonso , M. Iruarrizaga , F. Royo , J.M. Falcon-Perez
  URL Full text PDF Bibtex doi:10.1002/jex2.140
Extracellular vesicles from activated platelets possess a phospholipid-rich biomolecular profile and enhance prothrombinase activity - Journal of Thrombosis and Haemostasis (Jan. 2024)
E.M. Guerreiro , S.G. Kruglik , S. Swamy , N. Latysheva , B. Østerud , J.M. Guigner , F. Sureau , S. Bonneau , A.N. Kuzmin , P.N. Prasad , J.B. Hansen , O.G. Hellesø , O. Snir
  URL Full text PDF Bibtex doi:10.1016/j.jtha.2024.01.004
Friction forces determine cytoplasmic reorganization and shape changes of ascidian oocytes upon fertilization - Nature Physics (Jan. 2024)
S. Caballero-Mancebo, , A. Callan-Jones, , M. Peruzzo, , G. Szep, , I. Steccari, , D. Labrousse-Arias, , V. Zheden, , J. Merrin, , R. Voituriez , C.P. Heisenberg
  URL Full text PDF Bibtex doi:

2023

Polarization and motility of one-dimensional multi-cellular trains - Biophysical Journal (Nov. 2023)
J.E. Ron, , J. d’Alesandro, , V. Cellerin, , R. Voituriez , B. Ladoux, , N.S. Gov
  URL Full text PDF Bibtex doi:
Direct comparison of spatial transcriptional heterogeneity across diverse Bacillus subtilis biofilm communities - Nature communications (Nov. 2023)
Y. Dergham , D. Le Coq , P. Nicolas , E. Bidnenko , S. Dérozier , M. Deforet , E. Huillet , P. Sanchez-Vizuete , J. Deschamps , K. Hamze , R. Briandet
  URL Full text PDF Bibtex doi:https://doi.org/10.1038/s41467-023-43386-w
Dynamics of mitochondrial under oxidative stress with high spatiotemporal resolution - Front. Cell Dev. Biol. (Nov. 2023)
V. Loriette, , A. Fragola, , S. Kruglik , S. Sridhar, , A. Hubert , F. Orieux, , E. Sepulveda, , F. Sureau , S. Bonneau
  URL Full text PDF Bibtex doi:https://doi.org/10.3389/fcell.2023.1307502
DistNet2D: Leveraging long-range temporal information for efficient segmentation and tracking - Arxiv (Oct. 2023)
J. Ollion , M. Maliet , C. Giuglaris , E. Vacher , M. Deforet
  URL Full text PDF Bibtex doi:https://doi.org/10.48550/arXiv.2310.19641
Push-pull mechanics of E-cadherin ectodomains in biomimetic adhesions - Biophysical Journal (Jul. 2023)
K. Nagendra , A. Izzet , N.B. Judd , R. Zakine , L. Friedman , O.J. Harrison , L.L. Pontani , L. Shapiro , B. Honig , J. Brujic
  URL Full text PDF Bibtex doi:https://doi.org/10.1016/j.bpj.2023.07.026
Multimodal units fuse-then-accumulate evidence across channels - BioRxiv (Jul. 2023)
M. Ghosh , G. Béna , V. Bormuth , D. Goodman
  URL Full text PDF Bibtex doi:https://doi.org/10.1101/2023.07.24.550311
A Versatile and Open Source One- and Two-Photon Light-Sheet Microscope Design - BioRxiv (Jul. 2023)
T. Panier , G. Migault , A. Hubert , H. Trentesaux , B. Beaudou , G. Debrégeas , V. Bormuth
  URL Full text PDF Bibtex doi:https://doi.org/10.1101/2023.07.10.548107
The H-NOX protein structure adapts to different mechanisms in sensors interacting with nitric oxide - Chemical Science (Jul. 2023)
B.K. Yoo , S.G. Kruglik , J.C. Lambry , I. Lamarre , C.S. Raman , P. Niochede , M. Negrerie
  URL Full text PDF Bibtex doi:10.1039/d3sc01685d
Multisite transformation in Neisseria gonorrhoeae: insights on transformations mechanisms and new genetic modification protocols - Frontiers in Microbiology (Jun. 2023)
V.Y.M. Seow , O. Tsygelnytska , N. Biais
  URL Full text PDF Bibtex doi:https://doi.org/10.3389/fmicb.2023.1178128
Interaction of the mechanosensitive microswimmer Paramecium with obstacles - Royal Society Open Science (May. 2023)
N. Escoubet , R. Brette , L.L. Pontani , A.M. Prevost
  URL Full text PDF Bibtex doi:10.1098/rsos.221645
Leftward, rightward, and complete exit-time distributions of jump processes - Physical review E (May. 2023)
J. Klinger , R. Voituriez , O. Benichou
  URL Full text PDF Bibtex doi:https://doi.org/10.1103/PhysRevE.107.054109
Emergence of Exopolysaccharides Overproducers Is Linked to Environmental Spatial Structure via Redox State - mSphere (Apr. 2023)
M. Ardré , M. Deforet
  URL Full text PDF Bibtex doi:https://doi.org/10.1128/msphere.00123-23
A simple method to make, trap and deform a vesicle in a gel - Scientific Reports (Apr. 2023)
P. Tapie , L. Montel , A. Prevost , L.L. Pontani , E. Wandersman
  URL Full text PDF Bibtex doi:https://doi.org/10.1038/s41598-023-31996-9
Long-range alteration of the physical environment mediates cooperation between Pseudomonas aeruginosa swarming colonies - Environmental Microbiology (Mar. 2023)
M. Deforet
  URL Full text PDF Bibtex doi:https://doi.org/10.1111/1462-2920.16373
Imperfect narrow escape problem - Physical Review E (Mar. 2023)
T. Guérin, , M. Dolgushev, , O. Bénichou, , R. Voituriez
  URL Full text PDF Bibtex doi:
Emergence of time persistence in an interpretable data-driven neural network model - ELIFE (Mar. 2023)
S. Wolf , G. Le Goc , S. Cocco, , G. Debrégeas , R. Monasson,
  URL Full text PDF Bibtex doi:https://doi.org/10.7554/eLife.79541
Neural assemblies uncovered by generative modeling explain whole-brain activity statistics and reflect structural connectivity - ELIFE (Mar. 2023)
T.L. van der Plas , J. Tubiana , G. Le Goc , G. Migault , M. Kunst , H. Baier , V. Bormuth , B. Englitz , G. Debregeas
  URL Full text PDF Bibtex doi:DOI10.7554/eLife.83139
An electrophysiological and kinematic model of Paramecium, the “swimming neuron” - PLOS Computational Biology (Feb. 2023)
I. Elices , A. Kulkarni , N. Escoubet , L.L. Pontani , A.M. Prevost , R. Brette
  URL Full text PDF Bibtex doi:10.1371/journal.pcbi.1010899
Fitness advantage of Bacteroides thetaiotaomicron capsular polysaccharide in the mouse gut depends on the resident microbiota - eLife (Feb. 2023)
D. Hoces , G. Greter , M. Arnoldini , M.L. Stäubli , C. Moresi , A. Sintsova , S. Berent , I. Kolinko , F. Bansept , A. Woller , J. Häfliger , E. Martens , W.D. Hardt , S. Sunagawa , C. Loverdo , E. Slack
  URL Full text PDF Bibtex doi:https://elifesciences.org/articles/81212

2022

Cells as «Tom Thumbs» of living tissues - Medecine Sciences: M/S (Nov. 2022)
J. d'Alessandro, , A. Barbier-Chebbah, , R. Voituriez , B. Ladoux
  URL Full text PDF Bibtex doi:
Splitting Probabilities of Symmetric Jump Processes - Physical Review Letters (Nov. 2022)
J. Klinger, , R. Voituriez , O. Bénichou
  URL Full text PDF Bibtex doi:
An analysis pipeline to compare explorative locomotion across fish species - STAR Protoc. (Nov. 2022)
G. Rajan , G. Debregeas , M.B. Orger , F. Del Bene
  URL Full text PDF Bibtex doi:10.1016/j.xpro.2022.101850
Self-generated gradients steer collective migration on viscoelastic collagen networks - Nature Materials (Oct. 2022)
A. G Clark, , A. Maitra, , C. Jacques, , M. Bergert, , C. Pérez-González, , A. Simon, , L. Lederer, , A. Diz-Muñoz, , X. Trepat, , R. Voituriez , D. Matic Vignjevic
  URL Full text PDF Bibtex doi:
A scalable assay for chemical preference of small freshwater fish - Frontiers in Behavioral Neuroscience (Sep. 2022)
B. Gallois , L.L. Pontani , G. Debrégeas , R. Candelier
  URL Full text PDF Bibtex doi:10.3389/fnbeh.2022.990792
Cell clusters adopt a collective amoeboid mode of migration in confined nonadhesive environments - Science Advances (Sep. 2022)
D.L. Pagès, , E. Dornier, , J. De Seze, , E. Gontran, , A. Maitra, , A. Maciejewski, , L. Wang, , R. Luan, , J. Cartry, , C. Canet-Jourdan, , J. Raingeaud, , G. Lemahieu, , M. Lebel, , M. Ducreux, , M. Gelli, , J.Y. Scoazec, , M. Coppey, , R. Voituriez , M. Piel, , F. Jaulin
  URL Full text PDF Bibtex doi:
Everlasting impact of initial perturbations on first-passage times of non-Markovian random walks - Nature Communications (Sep. 2022)
N. Levernier, , T. Mendes, , O. Bénichou, , R. Voituriez , T. Guérin
  URL Full text PDF Bibtex doi:
Intermittent attractive interactions lead to microphase separation in nonmotile active matter - Physical Review E (Sep. 2022)
H. Alston, , A.O. Parry, , R. Voituriez , T. Bertrand
  URL Full text PDF Bibtex doi:
Cytoplasmic forces functionally reorganize nuclear condensates in oocytes - Nature communications (Aug. 2022)
A. Al Jord, , G. Letort, , S. Chanet, , F.C. Tsai, , C. Antoniewski, , A. Eichmuller, , C. Da Silva, , J.R. Huynh, , N.S. Gov, , R. Voituriez , M.E. Terret, , M.H. Verlhac
  URL Full text PDF Bibtex doi:
Elasticity of podosome actin networks produces nanonewton protrusive forces - Nature communications (Jul. 2022)
M. Jasnin, , J. Hervy, , S. Balor, , A. Bouissou, , A. Proag, , R. Voituriez , J. Schneider, , T. Mangeat, , I. Maridonneau-Parini, , W. Baumeister, ` , S. Dmitrieff, , R. Poincloux
  URL Full text PDF Bibtex doi:
Spatial-temporal dynamics of a microbial cooperative behavior resistant to cheating - Nature communications (Jun. 2022)
H. Monaco , K.S. Liu , T. Sereno , M. Deforet , B.P. Taylor , Y. Chen , C.C. Reagor , J.B. Xavier
  URL Full text PDF Bibtex doi:https://doi.org/10.1038/s41467-022-28321-9
Evolutionary divergence of locomotion in two related vertebrate species - Cell Reports (Mar. 2022)
G. Rajan , J. Lafaye , G. Faini , M. Carbo-Tano , K. Duroure , D. Tanese , T. Panier , R. Candelier , J. Henninger , R. Britz , B. Judkewitz , C. Gebhardt , V. Emiliani , G. Debrégeas , C. Wyart , F. Del Bene
  URL Full text PDF Bibtex doi:10.1016/j.celrep.2022.110585
Self-interacting random walks: Aging, exploration, and first-passage times - Physical Review X (Mar. 2022)
A. Barbier-Chebbah, , O. Bénichou, , R. Voituriez
  URL Full text PDF Bibtex doi:
Joint statistics of space and time exploration of one-dimensional random walks - Physical Review E (Mar. 2022)
J. Klinger, , A. Barbier-Chebbah, , R. Voituriez , O. Bénichou
  URL Full text PDF Bibtex doi:
Front speed and pattern selection of a propagating chemical front in an active fluid - Physical Review E (Jan. 2022)
C. del Junco , A. Estevez-Torres , A. Maitra
  URL Full text PDF Bibtex doi:10.1103/PhysRevE.105.014602
Hydrodynamic flow and concentration gradients in the gut enhance neutral bacterial diversity - Proc. Natl. Acad. Sci. U. S. A. (Jan. 2022)
D. Labavic , C. Loverdo , A.F. Bitbol
  URL Full text PDF Bibtex doi:10.1073/pnas.2108671119
Origin of defects and positron annihilation in hybrid and all-inorganic perovskites - Chemistry of Materials (Jan. 2022)
A. Musiienko , J. Cizek , H. Elhadidy , P. Praus , K. Higgins , B. Dryzhakov , A. Kanak , F. Sureau , J. Pipek , E. Belas , M. Betušiak , M. Brynza , E. Lukosi , B. Hu , M. Ahmadi
  URL Full text PDF Bibtex doi:https://doi.org/10.1021/acs.chemmater.1c03540

2021

Programmed mechano-chemical coupling in reaction-diffusion active matter - Science Advances (Dec. 2021)
A. Senoussi , J.C. Galas , A. Estevez-Torres
  URL Full text PDF Bibtex doi:10.1126/sciadv.abi9865
Universal kinetics of imperfect reactions in confinement - Communications chemistry (Nov. 2021)
T. Guérin, , M. Dolgushev, , O. Bénichou, , R. Voituriez
  URL Full text PDF Bibtex doi:
Toward a universal model for spatially structured populations - Physical review letters (Nov. 2021)
L. Marrec , I. Lamberti , A.F. Bitbol
  URL Full text PDF Bibtex doi:https://doi.org/10.1103/PhysRevLett.127.218102
Isolation and Phospholipid Enrichment of Muscle Mitochondria and Mitoplasts - Bio Protoc (Oct. 2021)
A. Prola , A. Vandestienne , N. Baroudi , F. Joubert , L. Tiret , F. Pilot-Storck
  URL Full text PDF Bibtex doi:https://doi.org/10.21769/bioprotoc.4201
An In Vitro Model System to Test Mechano-Microbiological Interactions Between Bacteria and Host Cells - Cytoskeleton : Methods and Protocols (Sep. 2021)
L.C. Santos , E.L. Munteanu , N. Biais
  URL Full text PDF Bibtex doi:https://doi.org/10.1007/978-1-0716-1661-1_11
Trans-inhibition of axon terminals underlies competition in the habenulo-interpeduncular pathway - Current Biology (Sep. 2021)
M. Zaupa , S.M. Alavi Naini , M.A. Younes , E. Bullier , E.R. Duboué , H. Le Corronc , H. Soula , S. Wolf , R. Candelier , P. Legendre , M.E. Halpern , J.M. Mangin , E. Hong
  URL Full text PDF Bibtex doi:10.1016/j.cub.2021.08.051
A bending fluctuation-based mechanism for particle detection by ciliated structures - PNAS (Sep. 2021)
J.B. Thomazo , B. Le Réverend , L.L. Pontani , A. Prevost , E. Wandersman
  URL Full text PDF Bibtex doi:https://doi.org/10.1073/pnas.2020402118
Cooperation between melanoma cell states promotes metastasis through heterotypic cluster formation - Developmental Cell (Aug. 2021)
N.R. Campbell , A. Rao , M.V. Hunter , M.K. Sznurkowska , L. Briker , M. Zhang , M. Baron , S. Heilmann , M. Deforet , C. Kenny , L. Ferretti , T.H. Huang , S. Perlee , M. Garg , J. Nsengimana , M. Saini , E. Montal , M. Tagore , J. Newton-Bishop , M.R. Middleton , P. Corrie , D.J. Adams , R. Rabbie , N. Aceto , M.P. Levesque , R.A. Cornell , I. Yanai , J.B. Xavier , R.M. White
  URL Full text PDF Bibtex doi:https://doi.org/10.1016/j.devcel.2021.08.018
Cell migration guided by long-lived spatial memory - Nature Communications (Jul. 2021)
J. D’alessandro, , A. Barbier--Chebbah, , V. Cellerin, , O. Benichou, , R.M. Mège, , R. Voituriez , B. Ladoux
  URL Full text PDF Bibtex doi:
Using single-vesicle technologies to unravel the heterogeneity of extracellular vesicles - Nature Protocols (Jul. 2021)
G. Bordanaba-Florit , F. Royo , S.G. Kruglik , J.M. Falcón-Pérez
  URL Full text PDF Bibtex doi:10.1038/s41596-021-00551-z
A rationally designed oral vaccine induces immunoglobulin A in the murine gut that directs the evolution of attenuated Salmonella variants - NATURE MICROBIOLOGY (Jul. 2021)
M. Diard , E. Bakkeren , V. Lentsch , A. Rocker , N.A. Bekele , D. Hoces , S. Aslani , M. Arnoldini , F. Bohi , K. Schumann-Moor , J. Adamcik , L. Piccoli , A. Lanzavecchia , B.M. Stadtmueller , N. Donohue , M.W. van der Woude , A. Hockenberry , P.H. Viollier , L. Falquet , D. Wuthrich , F. Bonfiglio , C. Loverdo , A. Egli , G. Zandomeneghi , R. Mezzenga , O. Holst , B.H. Meier , W.D. Hardt , E. Slack
  URL Full text PDF Bibtex doi:10.1038/s41564-021-00911-1
Fresh Extension of Vibrio cholerae Competence Type IV Pili Predisposes Them for Motor-Independent Retraction - Applied and Environmental Microbiology (Jun. 2021)
J.L. Chlebek , T.N. Dalia , N. Biais , A.B. Dalia
  URL Full text PDF Bibtex doi:https://doi.org/10.1128/AEM.00478-21
Mitochondrial Cristae Architecture and Functions: Lessons from Minimal Model Systems - Membranes (Jun. 2021)
F. Joubert , N. Puff
  URL Full text PDF Bibtex doi:https://doi.org/10.3390/membranes11070465
Open science saves lives: lessons from the COVID-19 pandemic - BMC MEDICAL RESEARCH METHODOLOGY (Jun. 2021)
L. Besancon , N. Peiffer-Smadja , C. Segalas , H. Jiang , P. Masuzzo , C. Smout , E. Billy , M. Deforet , C. Leyrat
  URL Full text PDF Bibtex doi:10.1186/s12874-021-01304-y
Toucher digital humain et mécano-transduction - L'Archicube (May. 2021)
A.M. Prevost , J. Scheibert
  URL Full text PDF Bibtex doi:
Learning from Embryo Development to Engineer Self-organizing Materials - Out-of-Equilibrium (Supra)molecular Systems and Materials (Apr. 2021)
A. Senoussi , Y. Vyborna , H. Berthoumieux , J.C. Galas , A. Estevez-Torres
Universality classes of hitting probabilities of jump processes - Physical Review Letters (Mar. 2021)
N. Levernier, , O. Bénichou, , R. Voituriez
  URL Full text PDF Bibtex doi:
Distribution of the span of one-dimensional confined random processes before hitting a target - Physical Review E (Mar. 2021)
J. Klinger, , R. Voituriez , O. Bénichou
  URL Full text PDF Bibtex doi:
Adhesion as a trigger of droplet polarization in flowing emulsions - Soft Matter (Mar. 2021)
I. Golovkova , L. Montel , F. Pan , E. Wandersman , A. Prevost , T. Bertrand , L.L. Pontani
  URL Full text PDF Bibtex doi:10.1039/d1sm00097g
FastTrack: An open-source software for tracking varying numbers of deformable objects - PLOS Computational Biology (Feb. 2021)
B. Gallois , R. Candelier
  URL Full text PDF Bibtex doi:10.1371/journal.pcbi.1008697
Reply to “Comment on ‘Inverse Square Lévy Walks are not Optimal Search Strategies for d>=2”’ - Physical review letters (Jan. 2021)
N. Levernier, , J. Textor, , O. Bénichou, , R. Voituriez
  URL Full text PDF Bibtex doi:
Multiconformational analysis of tripeptides upon consideration of implicit and explicit hydration effects - Journal of Molecular Graphics and Modelling (Jan. 2021)
B. Hernández , F. Pflüger , S.G. Kruglik , M. Ghomi
  URL Full text PDF Bibtex doi:10.1016/j.jmgm.2020.107790
Four species of bacteria deterministically assemble to form a stable biofilm in a millifluidic channel - NPJ Biofilms Microbiomes (Jan. 2021)
A. Monmeyran , W. Benyoussef , P. Thomen , N. Dahmane , A. Baliarda , M. Jules , S. Aymerich , N. Henry
  URL Full text PDF Bibtex doi:10.1038/s41522-021-00233-4
Programming Spatio-temporal Patterns with DNA-based Circuits - Wiley (publisher) DNA- and RNA-Based Computing Systems (Jan. 2021)
M. Van Der Hofstadt Serrano , G. Gines , J.C. Galas , A. Estevez-Torres
Cardiolipin content controls mitochondrial coupling and energetic efficiency in muscle - Science Advances (Jan. 2021)
A. Prola , J. Blondelle , A. Vandestienne , J. Piquereau , R. Denis , S. Guyot , H. Chauvin , A. Mourier , M. Maurer , C. Henry , N. Khadhraoui , C. Gallerne , T. Molinié , G. Courtin , L. Guillaud , M. Gressette , A. Solgadi , F. Dumont , J. Castel , J. Ternacle , J. Demarquoy , A. Malgoyre , N. Koulmann , G. Derumeaux , M.F. Giraud , F. Joubert , V. Veksler , S. Luquet , F. Relaix , L. Tiret , F. Pilot-Storck
  URL Full text PDF Bibtex doi:https://doi.org/10.1126/sciadv.abd6322
Cross-scale dynamics and the evolutionary emergence of infectious diseases - VIRUS EVOLUTION (Jan. 2021)
S.J. Schreiber , R. Ke , C. Loverdo , M. Park , P. Ahsan , J.O. Lloyd-Smith
  URL Full text PDF Bibtex doi:10.1093/ve/veaa105

2020

Anomalous persistence exponents for normal yet aging diffusion - Physical Review E (Dec. 2020)
A. Barbier–Chebbah, , O. Benichou, , R. Voituriez
  URL Full text PDF Bibtex doi:
Chiral active hexatics: Giant number fluctuations, waves, and destruction of order - Physical Review Letters (Dec. 2020)
A. Maitra, , M. Lenz, , R. Voituriez
  URL Full text PDF Bibtex doi:
Extrinsic noise prevents the independent tuning of gene expression noise and protein mean abundance in bacteria - Science Advances (Oct. 2020)
A. Deloupy , V. Sauveplane , J. Robert , S. Aymerich , M. Jules , L. Robert
  URL Full text PDF Bibtex doi:https://doi.org/10.1126/sciadv.abc3478
Adapt or perish: Evolutionary rescue in a gradually deteriorating environment - Genetics (Oct. 2020)
L. Marrec , A.F. Bitbol
  URL Full text PDF Bibtex doi:https://doi.org/10.1534/genetics.120.303624
One-dimensional cell motility patterns - Physical review research (Aug. 2020)
J.E. Ron, , P. Monzo, , N.C. Gauthier, , R. Voituriez , N.S. Gov
  URL Full text PDF Bibtex doi:
Cell stretching is amplified by active actin remodelling to deform and recruit proteins in mechanosensitive structures - Nature cell biology (Aug. 2020)
S. Massou, , F.N. Vicente, , F. Wetzel, , A. Mehidi, , D. Strehle, , C. Leduc, , R. Voituriez , O. Rossier, , P. Nassoy, , G. Giannone
  URL Full text PDF Bibtex doi:
Mitochondrial cristae modeled as an out-of-equilibrium membrane driven by a proton field - Phys. Rev. E (Aug. 2020)
N. Patil , S. Bonneau , F. Joubert , A.F. Bitbol , H. Berthoumieux
  URL Full text PDF Bibtex doi:10.1103/PhysRevE.102.022401
Blind deconvolution for spike inference from fluorescence recordings - JOURNAL OF NEUROSCIENCE METHODS (Aug. 2020)
J. Tubiana , S. Wolf , T. Panier , G. Debrégeas
  URL Full text PDF Bibtex doi:10.1016/j.jneumeth.2020.108763
Collective stiffening of soft hair assemblies - Physical Review E Rapid Communication (Jul. 2020)
J.B. Thomazo , E. Lauga , B. Le Révérend , E. Wandersman , A. Prevost
  URL Full text PDF Bibtex doi:10.1103/PhysRevE.102.010602
Cellular locomotion using environmental topography - Nature (Jun. 2020)
A. Reversat, , F. Gaertner, , J. Merrin, , J. Stopp, , S. Tasciyan, , J. Aguilera, , I. De Vries, , R. Hauschild, , M. Hons, , M. Piel, , A. Callan-Jones, , R. Voituriez , M. Sixt
  URL Full text PDF Bibtex doi:
Collective dynamics of focal adhesions regulate direction of cell motion - Cell Systems (Jun. 2020)
S. Lo Vecchio, , R. Thiagarajan, , D. Caballero, , V. Vigon, , L. Navoret, , R. Voituriez , D. Riveline
  URL Full text PDF Bibtex doi:
Cell response to substrate rigidity is regulated by active and passive cytoskeletal stress - Proceedings of the National Academy of Sciences (Jun. 2020)
B.L. Doss, , M. Pan, , M. Gupta, , G. Grenci, , R.M. Mège, , C.T. Lim, , M.P. Sheetz, , R. Voituriez , B. Ladoux
  URL Full text PDF Bibtex doi:
A simple device to immobilize protists for electrophysiology and microinjection - Journal of Experimental Biology (Jun. 2020)
A. Kulkarni , I. Elices , N. Escoubet , L.L. Pontani , A.M. Prevost , R. Brette
  URL Full text PDF Bibtex doi:10.1242/jeb.219253
Structural Analysis of Nonapeptides Derived from Elastin - Biophysical Journal (Jun. 2020)
B. Hernández , J.M. Crowet , J. Thiery , S.G. Kruglik , N. Belloy , S. Baud , M. Dauchez , L. Debelle
  URL Full text PDF Bibtex doi:10.1016/j.bpj.2020.04.019
Magnetron-Sputtered Polytetrafluoroethylene-Stabilized Silver Nanoisland Surface for Surface-Enhanced Fluorescence - Nanomaterials (Apr. 2020)
M. Šubr , P. Praus , A. Kuzminova , E. Kočišová , O. Kylián , F. Sureau , M. Procházka , J. Štěpánek
  URL Full text PDF Bibtex doi:https://doi.org/10.3390/nano10040773
Resist or perish: fate of a microbial population subjected to a periodic presence of antimicrobial - PLoS computational biology (Apr. 2020)
L. Marrec , A.F. Bitbol
  URL Full text PDF Bibtex doi:https://doi.org/10.1371/journal.pcbi.1007798
Kinetics of rare events for non-Markovian stationary processes and application to polymer dynamics - Physical Review Research (Mar. 2020)
N. Levernier, , O. Bénichou, , R. Voituriez , T. Guérin
  URL Full text PDF Bibtex doi:
Active diffusion in oocytes nonspecifically centers large objects during prophase I and meiosis I - Journal of Cell Biology (Mar. 2020)
A. Colin, , G. Letort, , N. Razin, , M. Almonacid, , W. Ahmed, , T. Betz, , M.E. Terret, , N.S. Gov, , R. Voituriez , Z. Gueroui, , M.H. Verlhac
  URL Full text PDF Bibtex doi:
Inverse Square Lévy Walks are not Optimal Search Strategies for d>=2 - Physical review letters (Feb. 2020)
N. Levernier, , J. Textor, , O. Bénichou, , R. Voituriez
  URL Full text PDF Bibtex doi:
Motility and morphodynamics of confined cells - Physical Review E (Feb. 2020)
I. Lavi, , N. Meunier, , R. Voituriez , J. Casademunt
  URL Full text PDF Bibtex doi:
Highlighting Curcumin-Induced Crosstalk between Autophagy and Apoptosis as Supported by Its Specific Subcellular Localization - Cells (Feb. 2020)
F.J.S. de Oyanguren , N.E. Rainey , A. Moustapha , A. Saric , F. Sureau , J.E. O’Connor , P.X. Petit
  URL Full text PDF Bibtex doi:https://doi.org/10.3390/cells9020361
Enhanced Orientational Ordering Induced by an Active yet Isotropic Bath - Physical Review Letters (Jan. 2020)
A. Maitra, , R. Voituriez
  URL Full text PDF Bibtex doi:
Stick-slip dynamics of cell adhesion triggers spontaneous symmetry breaking and directional migration of mesenchymal cells on one-dimensional lines - Science Advances (Jan. 2020)
K. Hennig, , I. Wang, , P. Moreau, , L. Valon, , S. DeBeco, , M. Coppey, , Y. Miroshnikova, , C. Albiges-Rizo, , C. Favard, , R. Voituriez , M. Balland
  URL Full text PDF Bibtex doi:
Growing, evolving and sticking in a flowing environment: understanding IgA interactions with bacteria in the gut - Immunology (Jan. 2020)
D. Hoces , M. Arnoldini , M. Diard , C. Loverdo , E. Slack
  URL Full text PDF Bibtex doi:https://doi.org/10.1111/imm.13156
Growing, evolving and sticking in a flowing environment: understanding IgA interactions with bacteria in the gut - IMMUNOLOGY (Jan. 2020)
D. Hoces , M. Arnoldini , M. Diard , C. Loverdo , E. Slack
  URL Full text PDF Bibtex doi:10.1111/imm.13156

2019

Nonlinear diffusion and hyperuniformity from Poisson representation in systems with interaction mediated dynamics - New Journal of Physics (Dec. 2019)
T. Bertrand, , D. Chatenay, , R. Voituriez
  URL Full text PDF Bibtex doi:
Iron chelation by curcumin suppresses both curcumin-induced autophagy and cell death together with iron overload neoplastic transformation - Cell Death Discovery (Dec. 2019)
N.E. Rainey , A. Moustapha , A. Saric , G. Nicolas , F. Sureau , P.X. Petit
  URL Full text PDF Bibtex doi:https://doi.org/10.1038/s41420-019-0234-y
DNA-based long-lived reaction-diffusion patterning in a host hydrogel - Soft Matter (Oct. 2019)
G. Urtel , A. Estevez-Torres , J.C. Galas
  URL Full text PDF Bibtex doi:10.1039/C9SM01786K
Characterization of a multicore fiber image guide for nonlinear endoscopic imaging using two-photon fluorescence and second-harmonic generation - Journal of Biomedical Optics (Oct. 2019)
A. Garofalakis , S.G. Kruglik , T. Mansuryan , A. Gillibert , L. Thiberville , F. Louradour , C. Vever-Bizet , G. Bourg-Heckly
  URL Full text PDF Bibtex doi:10.1117/1.JBO.24.10.106004
Clinical evaluation of a device providing simultaneous white-light and fluorescence video streams as well as panoramic imaging during fluorescence assisted–transurethral resection of bladder cancer - Journal of the Optical Society of America A (Oct. 2019)
M. Amouroux , J. Salleron , C. Huin-Schohn , S. Ali , S. Berthaud , P. Rizo , S. Schneider , C. Vever-Bizet , G. Bourg-Heckly , F. Guillemin , P. Le Coupanec , E. Galbrun , J. Daouk , C. Daul , W. Blondel , P. Eschwège
  URL Full text PDF Bibtex doi:https://dx.doi.org/10.1364/JOSAA.36.000C62
Disorder-to-Order Markers of a Cyclic Hexapeptide Inspired from the Binding Site of Fertilin Beta Involved in Fertilization Process - ACS Omega (Oct. 2019)
B. Hernández , P. Legrand , S. Dufay , R. Gahoual , S. Sanchez-Cortes , S.G. Kruglik , J. Fabreguettes , J. Wolf , P. Houzé , M. Ghomi
  URL Full text PDF Bibtex doi:10.1021/acsomega.9b01885
MT1-MMP directs force-producing proteolytic contacts that drive tumor cell invasion - Nature communications (Oct. 2019)
R. Ferrari, , G. Martin, , O. Tagit, , A. Guichard, , A. Cambi, , R. Voituriez , S. Vassilopoulos, , P. Chavrier
  URL Full text PDF Bibtex doi:
Active fluctuations of the nuclear envelope shape the transcriptional dynamics in oocytes - Developmental Cell (Oct. 2019)
M. Almonacid, , A. Al Jord, , S. El-Hayek, , A. Othmani, , F. Coulpier, , S. Lemoine, , K. Miyamoto, , R. Grosse, , C. Klein, , T. Piolot, , P. Mailly, , R. Voituriez , A. Genovesio, , M.H. Verlhac
  URL Full text PDF Bibtex doi:
Cellular blebs and membrane invaginations are coupled through membrane tension buffering - Biophysical Journal (Oct. 2019)
I. Lavi, , M. Goudarzi, , E. Raz, , N.S. Gov, , R. Voituriez , P. Sens
  URL Full text PDF Bibtex doi:
Tunable corrugated patterns in an active nematic sheet - PNAS (Oct. 2019)
A. Senoussi , S. Kashida , R. Voituriez , J.C. Galas , A. Maitra , A. Estevez-Torres
  URL Full text PDF Bibtex doi:10.1073/pnas.1912223116
Probing in-mouth texture perception with a biomimetic tongue - Journal of Royal Society Interface (Oct. 2019)
J.B. Thomazo , J.C. Pastenes , C.J. Pipe , B. Le Révérend , E. Wandersman , A. Prevost
  URL Full text PDF Bibtex doi:10.1098/rsif.2019.0362
Raman Tweezers Microspectroscopy of Functionalized 4.2-nm Diameter CdSe Nanocrystals in Water Reveals Changed Ligand Vibrational Modes by a Metal Cation - Journal of Physical Chemistry C (Sep. 2019)
R. Mrad , S.G. Kruglik , N. Ben Brahim , R. Ben Chaabane , M. Negrerie
  URL Full text PDF Bibtex doi:10.1021/acs.jpcc.9b06756
Evolution at the edge of expanding populations - The American Naturalist (Sep. 2019)
M. Deforet , C. Carmona-Fontaine , K.S. Korolev , J.B. Xavier
  URL Full text PDF Bibtex doi:
Diffusion through Nanopores in Connected Lipid Bilayer Networks - Phys. Rev. Lett. (Aug. 2019)
M. Valet , L.L. Pontani , R. Voituriez , E. Wandersman , A. Prevost
  URL Full text PDF Bibtex doi:10.1103/PhysRevLett.123.088101
A Semi-Automatic Dispenser for Solid and Liquid Food in Aquatic Facilities - Zebrafish (Aug. 2019)
R. Candelier , A. Bois , S. Tronche , J. Mahieu , A. Mannioui
  URL Full text PDF Bibtex doi:10.1089/zeb.2019.1733
Survival probability of stochastic processes beyond persistence exponents - Nature communications (Jul. 2019)
N. Levernier, , M. Dolgushev, , O. Bénichou, , R. Voituriez , T. Guérin
  URL Full text PDF Bibtex doi:
Actomyosin-driven force patterning controls endocytosis at the immune synapse - Nature Communications (Jun. 2019)
A. Kumari, , J. Pineau, , P.J. Sáez, , M. Maurin, , D. Lankar, , M. San Roman, , K. Hennig, , V.F. Boura, , R. Voituriez , M. Balland, , A.M. Lennon Dumenil, , P. Pierobon
  URL Full text PDF Bibtex doi:
Enchained growth and cluster dislocation: A possible mechanism for microbiota homeostasis - PLOS COMPUTATIONAL BIOLOGY (May. 2019)
F. Bansept , K. Schumann-Moor , M. Diard , W.D. Hardt , E. Slack , C. Loverdo
  URL Full text PDF Bibtex doi:10.1371/journal.pcbi.1006986
Large-scale curvature sensing by directional actin flow drives cellular migration mode switching - Nature physics (Apr. 2019)
T. Chen, , A. Callan-Jones, , E. Fedorov, , A. Ravasio, , A. Brugués, , H. Ting Ong, , Y. Toyama, , B. Chuan Low, , X. Trepat, , T. Shemesh, , R. Voituriez , B. Ladoux
  URL Full text PDF Bibtex doi:
Macropinocytosis overcomes directional bias in dendritic cells due to hydraulic resistance and facilitates space exploration - Dev Cell (Apr. 2019)
H.D. Moreau, , C. Blanch-Mercader, , R. Attia, , M. Maurin, , Z. Alraies, , D. Sanseau, , O. Malbec, , M.G. Delgado, , P. Bousso, , J.F. Joanny, , R. Voituriez , M. Piel, , A.M. Lennon-Duménil
  URL Full text PDF Bibtex doi:
Adhesive contact of model randomly rough rubber surfaces - Tribology Letters (Apr. 2019)
V. Acito , M. Ciavarella , A.M. Prevost , A. Chateauminois
  URL Full text PDF Bibtex doi:https://doi.org/10.1007/s11249-019-1164-9
Lipid unsaturation properties govern the sensitivity of membranes to photo-induced oxidative stress - Biophysical Journal (Mar. 2019)
A. Bour , S.G. Kruglik , M. Chabanon , P. Rangamani , N. Puff , S. Bonneau
  URL Full text PDF Bibtex doi:10.1016/j.bpj.2019.01.033
Signatures of motor susceptibility to forces in the dynamics of a tracer particle in an active gel - Physical Review E (Feb. 2019)
N. Razin, , R. Voituriez , N.S. Gov
  URL Full text PDF Bibtex doi:
Cell shape and substrate stiffness drive actin-based cell polarity - Physical Review E (Jan. 2019)
M. Gupta, , B.L. Doss, , L. Kocgozlu, , M. Pan, , R.M. Mège, , A. Callan-Jones, , R. Voituriez , B. Ladoux
  URL Full text PDF Bibtex doi:
Raman tweezers microspectroscopy of circa 100 nm extracellular vesicles - Nanoscale (Jan. 2019)
S.G. Kruglik , F. Royo , J.M. Guigner , L. Palomo , O. Seksek , P.Y. Turpin , I. Tatischeff , J.M. Falcon-Pérez
  URL Full text PDF Bibtex doi:10.1039/c8nr04677h

2018

Ribosomal protein eL42 contributes to the catalytic activity of the yeast ribosome at the elongation step of translation - Biochimie (Dec. 2018)
C. Hountondji , J.B. Créchet , M. Tanaka , M. Suzuki , J.I. Nakayama , B. Aguida , K. Bulygin , J.A.H. Cognet , G. Karpova , S. Baouz
  URL Full text PDF Bibtex doi://doi.org/10.1016/j.biochi.2018.12.005
Cultural transmission and biological markets - BIOLOGY \& PHILOSOPHY (Dec. 2018)
C. Loverdo , H. Viciana
  URL Full text PDF Bibtex doi:10.1007/s10539-018-9649-8
Environmentally Mediated Social Dilemmas - Trends in Ecology and Evolution (Nov. 2018)
S. Estrela , E. Libby , J. Van Cleve , F. Débarre , M. Deforet , W. R. Harcombe , J. Peña , S. P. Brown , M. E. Hochberg
  URL Full text PDF Bibtex doi:https://doi.org/10.1016/j.tree.2018.10.004
Whole-Brain Calcium Imaging during Physiological Vestibular Stimulation in Larval Zebrafish - Current Biology (Nov. 2018)
G. Migault , T.L. van der Plas , H. Trentesaux , T. Panier , R. Candelier , R. Proville , B. Englitz , G. Debrégeas , V. Bormuth
  URL Full text PDF Bibtex doi:https://doi.org/10.1016/j.cub.2018.10.017
Inferring interaction partners from protein sequences using mutual information - PLoS Computational Biology (Nov. 2018)
A.F. Bitbol
  URL Full text PDF Bibtex doi:10.1371/journal.pcbi.1006401
Tracer diffusion in crowded narrow channels - J. Phys.-Condes. Matter (Nov. 2018)
O. Benichou , P. Illien , G. Oshanin , A. Sarracino , R. Voituriez
  URL Full text PDF Bibtex doi:10.1088/1361-648X/aae13a
The inducible chemical-genetic fluorescent marker FAST outperforms classical fluorescent proteins in the quantitative reporting of bacterial biofilm dynamics - Scientific Reports (Oct. 2018)
A. Monmeyran , P. Thomen , H. Jonquiere , F. Sureau , C. Li , M.A. Plamont , C. Douarche , J.F. Casella , A. Gautier , N. Henry
  URL Full text PDF Bibtex doi:10.1038/s41598-018-28643-z
pH sensing by lipids in membranes: The fundamentals of pH-driven migration, polarization and deformations of lipid bilayer assemblies - Biochimica et Biophysica Acta - Biomembranes (Oct. 2018)
M.I. Angelova , A.F. Bitbol , M. Seigneuret , G. Staneva , A. Kodama , Y. Sakuma , T. Kawakatsu , M. Imai , N. Puff
  URL Full text PDF Bibtex doi:10.1016/j.bbamem.2018.02.026
Analytical expression of elastic rods at equilibrium under 3D strong anchoring boundary conditions - Journal of Computational Physics (Sep. 2018)
O. Ameline , S. Haliyo , X. Huang , J.A.H. Cognet
  URL Full text PDF Bibtex doi://doi.org/10.1016/j.jcp.2018.07.021
Universal first-passage statistics in aging media - Phys. Rev. E (Aug. 2018)
N. Levernier , O. Benichou , T. Guerin , R. Voituriez
  URL Full text PDF Bibtex doi:10.1103/PhysRevE.98.022125
Integrating Physical and Molecular Insights on Immune Cell Migration - Trends Immunol. (Aug. 2018)
H.D. Moreau , M. Piel , R. Voituriez , A.M. Lennon-Dumenil
  URL Full text PDF Bibtex doi:10.1016/j.it.2018.04.007
Mutation rates and effects in single cells - Science (Jul. 2018)
L. Robert , J. Ollion , J. Robert , X. Song , I. Matic , M. Elez
  URL Full text PDF Bibtex doi:10.1126/science.aan0797
Directed Flow of Micromotors through Alignment Interactions with Micropatterned Ratchets - ACS Nano (Jul. 2018)
J. Katuri , D. Caballero , R. Voituriez , J. Samitier , S. Sanchez
  URL Full text PDF Bibtex doi:10.1021/acsnano.8b03494
Intermittent Pili-Mediated Forces Fluidize Neisseria meningitidis Aggregates Promoting Vascular Colonization - Cell (Jun. 2018)
D. Bonazzi , V. Lo Schiavo , S. Machata , I. Djafer-Cherif , P. Nivoit , V. Manriquez , H. Tanimoto , J. Husson , N. Henry , H. Chate , R. Voituriez , G. Dumenil
  URL Full text PDF Bibtex doi:10.1016/j.cell.2018.04.010
Ependymal cilia beating induces an actin network to protect centrioles against shear stress - Nat. Commun. (Jun. 2018)
A. Mahuzier , A. Shihavuddin , C. Fournier , P. Lansade , M. Faucourt , N. Menezes , A. Meunier , M. Garfa-Traore , M.F. Carlier , R. Voituriez , A. Genovesio , N. Spassky , N. Delgehyr
  URL Full text PDF Bibtex doi:10.1038/s41467-018-04676-w
Assessment of the ability of poly(l-lysine)-poly(ethylene glycol) (PLL-PEG) hydrogels to support the growth of U87-MG and F98 glioma tumor cells - J. Appl. Polym. Sci. (Jun. 2018)
E. Gontran , M. Juchaux , C. Deroulers , S. Kruglik , N. Huang , M. Badoual , O. Seksek
  URL Full text PDF Bibtex doi:10.1002/app.46287
Phosphorescence Kinetics of Singlet Oxygen Produced by Photosensitization in Spherical Nanoparticles. Part I. Theory - J. Phys. Chem. B (May. 2018)
A. Hovan , S. Datta , S.G. Kruglik , D. Jancura , P. Miskovsky , G. Bano
  URL Full text PDF Bibtex doi:10.1021/acs.jpcb.8b00658
Phosphorescence Kinetics of Singlet Oxygen Produced by Photosensitization in Spherical Nanoparticles. Part II. The Case of Hypericin-Loaded Low-Density Lipoprotein Particles - J. Phys. Chem. B (May. 2018)
S. Datta , A. Hovan , A. Jutkova , S.G. Kruglik , D. Jancura , P. Miskovsky , G. Bano
  URL Full text PDF Bibtex doi:10.1021/acs.jpcb.8b00659
Nonequilibrium Fluctuations and Enhanced Diffusion of a Driven Particle in a Dense Environment - Phys. Rev. Lett. (May. 2018)
P. Illien , O. Benichou , G. Oshanin , A. Sarracino , R. Voituriez
  URL Full text PDF Bibtex doi:10.1103/PhysRevLett.120.200606
Optimized Diffusion of Run-and-Tumble Particles in Crowded Environments - Physical Review Letters (May. 2018)
T. Bertrand , Y. Zhao , O. Bénichou , J. Tailleur , R. Voituriez
  URL Full text PDF Bibtex doi:https://doi.org/10.1103/PhysRevLett.120.198103
Time rescaling reproduces EEG behavior during transition from propofol anesthesia-induced unconsciousness to consciousness - Sci Rep (Apr. 2018)
S. Boussen , A. Spiegler , C. Benar , M. Carrere , F. Bartolomei , P. Metellus , R. Voituriez , L. Velly , N. Bruder , A. Trebuchon
  URL Full text PDF Bibtex doi:10.1038/s41598-018-24405-z
Quantitative Characterization of Translational Riboregulators Using an in Vitro Transcription-Translation System - ACS Synth. Biol. (Apr. 2018)
A. Senoussi , J. Lee Tin Wah , Y. Shimizu , J. Robert , A. Jaramillo , S. Findeiss , I. M. Axmann , A. Estevez-Torres
  URL Full text PDF Bibtex doi:10.1021/acssynbio.7b00387
Archaeal cells share common size control with bacteria despite noisier growth and division - Nature Microbiology (Feb. 2018)
Y.J. Eun , P.Y. Ho , M. Kim , S. LaRussa , L. Robert , L. Renner , A. Schmid , E. Garner , A. Amir
  URL Full text PDF Bibtex doi:10.1038/s41564-017-0082-6
Quasistatic Microdroplet Production in a Capillary Trap - Phys. Rev. Applied (Feb. 2018)
M. Valet , L.L. Pontani , A. Prevost , E. Wandersman
  URL Full text PDF Bibtex doi:https://doi.org/10.1103/PhysRevApplied.9.014002
Dynamical Behavior of Somatostatin-14 and Its Cyclic Analogues as Analyzed in Bulk and on Plasmonic Silver Nanoparticles - Advances in Protein Chemistry and Structural Biology (Feb. 2018)
B. Hernandez , Y.M. Coïc , E.L. Tobar , S. Sanchez-Cortez , B. Baron , F. Pfluger , S.G. Kruglik , R. Cohen , M. Ghomi
  URL Full text PDF Bibtex doi:10.1016/bs.apcsb.2018.01.002
Method for Detecting and Studying Genome-Wide Mutations in Single Living Cells in Real Time - Methods Mol Biol (Jan. 2018)
M. Elez , L. Robert , I. Matic
  URL Full text PDF Bibtex doi:https://doi.org/10.1007/978-1-4939-7638-6_3

2017

Analysis of a nonlocal and nonlinear fokker planck model for cell crawling migration - SIAM Journal on Applied Mathematics (Dec. 2017)
C. Etchegaray , N. Meunier , R. Voituriez
  URL Full text PDF Bibtex doi:
Forces in inhomogeneous open active-particle systems - PHYSICAL REVIEW E (Nov. 2017)
N. Razin , R. Voituriez , J. Elgeti , N.S. Gov
  URL Full text PDF Bibtex doi:10.1103/PhysRevE.96.052409
Nonequilibrium fluctuations of lipid membranes by the rotating motor protein F1F0-ATP synthase - Proceedings of the National Academy of Sciences of the United States of America (Oct. 2017)
V.G. Almendro-Vedia , P. Natale , M. Mell , S. Bonneau , F. Monroy , F. Joubert , I. López-Montero
  URL Full text PDF Bibtex doi:10.1073/pnas.1701207114
Generalized Archimedes' principle in active fluids - PHYSICAL REVIEW E (Sep. 2017)
N. Razin , R. Voituriez , J. Elgeti , N.S. Gov
  URL