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Engineering synthetic developmental patterns: how many ways can you make a stripe?
Par Mark Isalan (Imperial College, London)
Le 15 Mars 2016 à 10h00 - Salle de séminaires 5ème étage, Tour 32-33

Résumé

Synthetic biology is a promising tool to study the function and properties of gene regulatory networks. Gene circuits with predefined behaviors have been successfully built and modeled, but largely on a case-by-case basis. In this talk, I will present work where we go beyond individual networks and explore both computationally and synthetically the design space of possible dynamical mechanisms for 3-node stripe-forming networks. First, we computationally test every possible 3-node network for stripe formation in a morphogen gradient. We discover four different dynamical mechanisms to form a stripe and identify the minimal network of each group. Next, with the help of newly established engineering criteria we build these four networks synthetically and show that they indeed operate with four fundamental distinct mechanisms. Finally, this close match between theory and experiments allows us to infer and subsequently build a 2-node network that represents the archetype of the explored design space.